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Publications (27)      

1. Bourland, William A., Johana Rotterová, Xiaotian Luo & Ivan Čepička. 2018 The little-known freshwater armophorean ciliate, Ideomtopus turbo nov. gen., nov. comb. (Dragesco and Dragesco-Kernéis, 1986), originally discovered in Africa, found on the Micronesian island of Guam Protist 169: 494–506.
2. Bourland, William A., Ondřej Pomahač & Ivan Čepička. 2022 Morphology and phylogeny of two anaerobic freshwater ciliates: Brachonella comma sp. nov. and the widely distributed but little-known caenomorphid, Ludio parvulus Penard, 1922 Journal of Eukaryotic Microbiology 69(3): e12892.
3. Bourland, William, Johana Rotterová & Ivan Čepička. 2020 Description of three new genera of Metopidae (Metopida, Ciliophora): Pileometopus gen. nov., Castula gen. nov., and Longitaenia gen. nov., with notes on the phylogeny and cryptic diversity of metopid ciliates Protist 171(3): Article number 125740.
4. Céza, Vít, Michael Kotyk, Aneta Kubánková, Naoji Yubuki, František Šťáhlavský, Ivan Čepička & Jeffrey D. Silberman. 2022 Free-living trichomonads Protist 173(4).
5. Céza, Vít, Tomáš Pánek, Pavla Smejkalová & Ivan Čepička. 2015 Molecular and morphological diversity of the genus Hypotrichomonas (Parabasalia: Hypotrichomonadida), with descriptions of six new species European Journal of Protistology 51(2): 158-172.
6. Foučková, Martina, Kristýna Uhrová, Aneta Kubánková, Tomáš Pánek & Ivan Čepička. 2024 Lighting lantern above Psalteriomonadidae: Unveiling novel diversity within the genus Psalteriomonas (Discoba: Heterolobosea) European Journal of Protistology 93(126052).
7. Hanousková, Pavla, Petr Táborský & Ivan Čepička. 2019 Dactylomonas gen. nov., a novel lineage of heterolobosean flagellates with unique ultrastructure, closely related to the amoeba Selenaion koniopes Park, De Jonckheere & Simpson, 2012. Journal of Eukaryotic Microbiology 66(1): 120-139.
8. Kotyk, Michael, Matyáš Soviš, Harley Rose, Nathan Lo, Ivan Čepička & William A. Bourland. 2024 Reductitherus cryptostomus n. gen., n. sp. (Ciliophora: Armophorea: Clevelandellida), a remarkable new nyctotherid from an Australian cockroach, Parapanesthia gigantea (Blaberidae: Panesthiinae) Protist 175(4): 126036.
9. Kotyk, Michael, William A. Bourland, Matyáš Soviš, Daniel Méndez-Sánchez, Ivan Čepička, Pavel Škaloud & Zuzana Kotyková Varadínová. 2024 Morphology matters: congruence of morphology and phylogeny in the integrative taxonomy of Clevelandellidae (Ciliophora: Armophorea) with description of six new species Zoological Journal of the Linnean Society 202: zlad154.
10. Méndez-Sánchez, Daniel, Johana Rotterová, Ondřej Pomahač, William A. Bourland & Ivan Čepička. 2022 Diversity and phylogenetic Position of Bothrostoma Stokes, 1887 (Ciliophora: Metopida), with description of four new species Protist 173(4): 125887.
11. Méndez-Sánchez, Daniel, Ondřej Pomahač, Johana Rotterová, William A. Bourland & Ivan Čepička. 2023 Morphology and phylogenetic position of three anaerobic ciliates from the classes Odontostomatea and Muranotrichea (Ciliophora) Journal of Eukaryotic Microbiology 70(3): e12965.
12. Pánek, Tomáš, Alastair G. B. Simpson, Vladimír Hampl & Ivan Čepička. 2014 Creneis carolina n. sp., n. gen, marine eukaryote with strikingly derived morphology and life cycle Protist 165(4): 542-457.
13. Pánek, Tomáš, Eliška Ptáčková & Ivan Čepička. 2014 Survey on diversity of marine/saline anaerobic Heterolobosea (Excavata: Discoba) with description of seven new species International Journal of Systematic and Evolutionary Microbiology 64(7): 2280-2304.
14. Pánek, Tomáš, Petr Táborský, Maria G. Pachiadaki, Miluše Hroudová, Čestmír Vlček, Virginia P. Edgcomb & Ivan Čepička. 2015 Combined culture-based and culture-independent approaches provide insights into diversity of jakobids, an extremely plesiomorphic eukaryotic lineage Frontiers in Microbiology 6: 1288.
15. Pavlátová, Magdaléna, Pavla Hanousková & Ivan Čepička. 2024 Anaeramoeba pumilla sp. nov. and Anaeramoeba sp. OCE22C represent two novel types of symbiosis of Anaeramoebae and prokaryotes Journal of Eukaryotic Microbiology 71(1): e13008.
16. Poláková, Kateřina, Ivan Čepička & William A. Bourland. 2021 Phylogenetic position of three well-known ciliates from the controversial order Loxocephalida Jankowski, 1980 (Scuticociliatia, Oligohymenophorea) and Urozona buetschlii (Schewiakoff, 1889) with improved morphological descriptions Protist 172(4): 125833.
17. Poláková, Kateřina, William A. Bourland & Ivan Čepička. 2023 Anaerocyclidiidae European Journal of Protistology 90: 126009.
18. Pomahač, Ondřej, Daniel Méndez-Sánchez & Ivan Čepička. 2024 Bit by bit toward the diversity of metopids: Description of the genus Pidimetopus n. gen. (Ciliophora: Armophorea) Journal of Eukaryotic Microbiology 71(4): e13034.
19. Rotterová, Johana, Eric Salomaki, Tomáš Pánek, William Bourland, David Žihala, Petr Táborský, Virginia P. Edgcomb, Roxanne Beinart, Martin Kolisko & Ivan Čepička. 2020 Genomics of New ciliate lineages provides insight into the evolution of obligate anaerobiosis Current Biology 30: 2037–2050.
20. Rotterová, Johana, William A. Bourland & Ivan Čepička. 2018 Corrigendum to "Tropidoatractidae fam. nov., a deep branching lineage of Metopida (Armophorea, Ciliophora) found in diverse habitats and possessing prokaryotic symbionts" [Protist 169 (July (3)) (2018) 362-405] Protist 169(5): 788-789.
21. Rotterová, Johana, William A. Bourland & Ivan Čepička. 2018 Tropidoatractidae fam. nov., a Deep Branching Lineage of Metopida (Armophorea, Ciliophora) Found in Diverse Habitats and Possessing Prokaryotic Symbionts Protist 169(3): 362-405.
22. Táborský, Petr, Tomáš Pánek & Ivan Čepička. 2017 Anaeramoebidae fam. nov., a novel lineage of anaerobic amoebae and amoeboflagellates of uncertain phylogenetic position. Protist 168(5): 495-526.
23. Treitli, Sebastian C., Michael Kotyk, Naoji Yubuki, Eliška Jirounková, Eliška Vlasáková, Pavla Smejkalová, Petr Šípek, Ivan Čepička & Vladimír Hampl. 2018 Molecular and morphological diversity of the oxymonad genera Monocercomonoides and Blattamonas n. gen. Protist 169(5): 744-783.
24. Vargová, Romana, Pavla Hanousková, Jana Salamonová, David Žihala, Jeffrey D. Silberman, Marek Eliáš & Ivan Čepička. 2022 Evidence for an independent hydrogenosome-to-mitosome transition in the CL3 lineage of fornicates Frontiers in Microbiology 13: 866459.
25. Yubuki, Naoji, Eliška Zadrobílková & Ivan Čepička. 2017 Ultrastructure and molecular phylogeny of Iotanema spirale gen. et sp. nov., a new lineage of endobiotic Fornicata with strikingly simplified morphology and ultrastructure Journal of Eukaryotic Microbiology 64(4): 422-433.
Zadrobílková, Eliška, Giselle Walker & Ivan Čepička. 2015 Morphological and Molecular Evidence Support a Close Relationship Between the Free-living Archamoebae Mastigella and Pelomyxa Protist 166(1): 14-41.
Zadrobílková, Eliška, Giselle Walker & Ivan Čepička. 2016 Molecular phylogeny of the genus Rhizomastix (Amoebozoa: Archamoebae) with descriptions of five new species Journal of Eukaryotic Microbiology 63(2): 181-197.
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